For RNAseq analysis on the Rocce cluster, download the following files into a folder named "XXXX" in your data folder (as such: data/scratch/username/XXXX)

You will need to download the following files into the same folder for the rat genome: genes.gtf genome.fa, genome.fa.fai, genome.rev.1.ebwt, genome.rev.2.ebwt. These files can be found here: